Program
| Time |
Event |
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12:30 - 14:15
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Lunch and Registration - - |
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14:15 - 14:30
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Welcome and opening remarks - - |
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14:30 - 15:50
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Session 1 |
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14:30 - 15:10 |
› Molecular and cellular basis for host chromatin invasion by retroviral genomes - Vincent Parissi, Laboratoire de Microbiologie Fondamentale et Pathogénicité |
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15:10 - 15:30 |
› Atypical landscape of transposable elements in the large genome of Aedes aegypti - Josquin Daron, Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France |
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15:30 - 15:50 |
› Functional consequences of disrupting the epigenetic targeting of transposable elements in Arabidopsis thaliana - Mounia El Messaoudi, Institut de Biologie de l'École Normale Supérieure |
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15:50 - 16:30
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Coffee break |
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16:30 - 17:30
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Session 2 |
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16:30 - 16:50 |
› Studying the population dynamics of transposable elements: new avenues for research. - Yann Bourgeois, IRD, Montpellier |
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16:50 - 17:10 |
› Function and conservation of Drosophila paralogs in the light of their mobilome neighborhood - Emmanuelle Lerat, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 |
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17:10 - 17:30 |
› A first step towards the characterization of endogenous retroviruses' evolutionary history and impact on small ruminant genomes - Marie Verneret, Infections Virales et Pathologie Comparée - UMR 754, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 |
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18:30 - 20:30
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Poster Session Wine and Cheese |
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18:30 - 20:30 |
› An LTR-retrotransposon insertion associated with longer grains in indica rice - Noemia Morales, Centre for Research in Agricultural Genomics |
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18:30 - 20:30 |
› Analyse comparative de l'expression des éléments transposables L1HS par le biais des kmers - Camelia Sennaoui, IRMB U1183 - Nicolas Gilbert, IRMB U1183 - Anthony Boureux, IRMB U1183 |
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18:30 - 20:30 |
› Cell response to retroviral infection Role of the BRCA1/1 pathway on the regulation of non-integrated and integrated viral DNA - Delphine Lapaillerie, Microbiologie Fondamentale et Pathogénicité - Vincent Parissi, Laboratoire de Microbiologie Fondamentale et Pathogénicité |
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18:30 - 20:30 |
› Deciphering the mechanism underlying the non-canonical integration site selection of the Ty1 LTR-retrotransposon of S. cerevisiae - Beatrice Capuzzi, Institut de Recherche Saint-Louis - Hématologie Immunologie Oncologie (Département de recherche de l'UFR de médecine ; ex- Institut Universitaire Hématologie-IUH) |
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18:30 - 20:30 |
› Detection of copy number alteration signal from plasma DNA LINE-1 targeted bisulfite sequencing : towards a tumor burden marker - Klaus VON GRAFENSTEIN, Institut de recherche en santé, environnement et travail |
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18:30 - 20:30 |
› Identifying LTR-retrotransposon RNA-protein interactions using Comprehensive Identification of RNA-binding proteins (ChIRP-MS) in S. cerevisiae - Hélène BONNET, Institut de Recherche Saint-Louis - Hématologie Immunologie Oncologie (Département de recherche de l'UFR de médecine ; ex- Institut Universitaire Hématologie-IUH) |
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18:30 - 20:30 |
› Implementation of pangenome graphs to study rice transposon dynamics - Svitlana Sushko, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Campus UAB, Edifici CRAG, Bellaterra, Barcelona 08193, Spain |
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18:30 - 20:30 |
› Nanopore targeted sequencing to study transposition and DNA methylation profiles of mobile elements in Arabidopsis thaliana. - Matteo Barois, Institut de biologie de l'ENS Paris |
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18:30 - 20:30 |
› Mode, tempo, and functional consequences of transposable element mobilization in selfing and outcrossing Arabidopsis lyrata populations - Louna De Oliveira, Institut de biologie de l'ENS Paris |
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18:30 - 20:30 |
› Using pangenomes to elucidate the impact of TEs in the polyploidization and domestication of cotton - Lucia Campos Dominguez, Centre for Research in Agricultural Genomics |
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18:30 - 20:30 |
› "P elements in Drosophila willistoni group species”. - Stéphane Ronsseray, IBPS - SU - CNRS |
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18:30 - 20:30 |
› Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster - Anaïs Larue, Biologie Fonctionnelle, Insectes et Interactions, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 |
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18:30 - 20:30 |
› DupFinder: a powerful and accurate Nextflow pipeline to detect gene duplications from whole genome sequencing data - Assane Mbodj, IRD |
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| Time |
Event |
(+)
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09:00 - 10:00
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Session 3 |
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09:40 - 10:00 |
› Chemical screening to identify inhibitors of human LINE-1 endonuclease activity in cancer and aging - Aurélien Doucet, Institut de Recherche sur le Cancer et le Vieillissement |
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10:00 - 10:50
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Coffee break |
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10:50 - 12:10
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Session 4 |
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10:50 - 11:10 |
› Plant mobile domain proteins ensure Microrchidia 1 expression to fulfill transposon silencing - Guillaume Moissiard, Laboratoire Génome et développement des plantes UMR5096 |
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11:10 - 11:30 |
› Role of transposable elements in a parasitoid wasp ongoing speciation - Camille Heisserer, Institut de recherche sur la biologie de l'insecte UMR7261 |
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11:30 - 11:50 |
› Is the siRNA pathway involved in somatic regulation of transposable elements in the mosquito Aedes aegypti? - Alexander Bergman, Interactions Virus-Insectes - Insect-Virus Interactions |
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11:50 - 12:10 |
› REPET novelties : a versatile and modular package - johann confais, Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France, Université Paris-Saclay, INRAE, BioinfOmics, Plant bioinformatics facility, 78026, Versailles, France |
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12:10 - 14:00
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Lunch |
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14:00 - 15:20
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Session 5 |
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14:00 - 14:20 |
› Impact of viral infections on transposable element transcripts and small RNA abundances in Aedes aegypti - Chloé Garambois, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 |
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14:20 - 14:40 |
› HELA: A fast and accurate tool for Helitron annotation - Zhen Li, Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198 Gif-sur-Yvette, France |
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14:40 - 15:00 |
› Transposable element mobility as a motor of genomic variation in Beech trees ? - Abirami Soundiramourtty, Laboratoire Génome et développement des plantes |
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15:00 - 15:20 |
› Study of the interactome and expression of the ORF1p protein encoded by LINE-1 retrotransposons in the brain under aging and pathophysiological conditions. - Tom BONNIFET, CIRB - Collège de France |
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15:20 - 16:00
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Coffee break |
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16:00 - 17:30
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Round Table - Vincent Colot |
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19:00 - 22:30
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Gala dinner on the beach - Restaurant Pescadoras
Route De La Plage Nord Camping Marisol,
66440 Torreilles Plage
France |
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| Time |
Event |
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09:00 - 10:20
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Session 6 |
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09:00 - 09:40 |
› Transposon insertions associate with transcriptional variability linked to rice domestication and breeding - Raúl CASTANERA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Campus UAB, Edifici CRAG, Bellaterra, Barcelona 08193, Spain |
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10:00 - 10:20 |
› Transposable elements as an evolutionary driving force in cactophilic Drosophila species - Daniel Siqueira de Oliveira, Université Claude Bernard Lyon 1, Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University |
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10:30 - 10:50
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Coffee break |
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10:50 - 11:50
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Session 7 |
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11:10 - 11:30 |
› Decoding Human Endogenous Retrovirus Landscape in liver metastatic colorectal cancers: Implications for Diagnosis and Prognosis - Julien Viot, ONCOLOGY BESANCON INSERM 1098, Autoimmunité, Transplantation, et Inflammation (UMR 1098) |
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11:30 - 11:50 |
› Characterization of Transposable Elements in Pangenomes - Somia SAIDI, Université Paris-Saclay, INRAE, URGI, 78026 Versailles, France., Université Paris-Saclay, INRAE, BioinfOmics, Plant bioinformatics facility, 78026, Versailles, France. |
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