09:00
10:00
11:00
12:00
13:00
14:00
15:00
16:00
17:00
18:00
19:00
20:00
21:00
22:00
12:30 - 14:15 (1h45)
Lunch and Registration
-
14:15 - 14:30 (15min)
Welcome and opening remarks
-
14:30 - 15:50 (1h20)
Session 1
› Molecular and cellular basis for host chromatin invasion by retroviral genomes
- Vincent Parissi, Laboratoire de Microbiologie Fondamentale et Pathogénicité
14:30-15:10 (40min)
› Atypical landscape of transposable elements in the large genome of Aedes aegypti
- Josquin Daron, Institut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France
15:10-15:30 (20min)
› Functional consequences of disrupting the epigenetic targeting of transposable elements in Arabidopsis thaliana
- Mounia El Messaoudi, Institut de Biologie de l'École Normale Supérieure
15:30-15:50 (20min)
15:50 - 16:30 (40min)
Coffee break
16:30 - 17:30 (1h)
Session 2
› Studying the population dynamics of transposable elements: new avenues for research.
- Yann Bourgeois, IRD, Montpellier
16:30-16:50 (20min)
› Function and conservation of Drosophila paralogs in the light of their mobilome neighborhood
- Emmanuelle Lerat, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
16:50-17:10 (20min)
› A first step towards the characterization of endogenous retroviruses' evolutionary history and impact on small ruminant genomes
- Marie Verneret, Infections Virales et Pathologie Comparée - UMR 754, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
17:10-17:30 (20min)
18:30 - 20:30 (2h)
Poster Session Wine and Cheese
› "P elements in Drosophila willistoni group species”.
- Stéphane Ronsseray, IBPS - SU - CNRS
18:30-20:30 (2h)
› An LTR-retrotransposon insertion associated with longer grains in indica rice
- Noemia Morales, Centre for Research in Agricultural Genomics
18:30-20:30 (2h)
› Analyse comparative de l'expression des éléments transposables L1HS par le biais des kmers
- Camelia Sennaoui, IRMB U1183 - Nicolas Gilbert, IRMB U1183 - Anthony Boureux, IRMB U1183
18:30-20:30 (2h)
› Cell response to retroviral infection Role of the BRCA1/1 pathway on the regulation of non-integrated and integrated viral DNA
- Delphine Lapaillerie, Microbiologie Fondamentale et Pathogénicité - Vincent Parissi, Laboratoire de Microbiologie Fondamentale et Pathogénicité
18:30-20:30 (2h)
› Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster
- Anaïs Larue, Biologie Fonctionnelle, Insectes et Interactions, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
18:30-20:30 (2h)
› Deciphering the mechanism underlying the non-canonical integration site selection of the Ty1 LTR-retrotransposon of S. cerevisiae
- Beatrice Capuzzi, Institut de Recherche Saint-Louis - Hématologie Immunologie Oncologie (Département de recherche de l'UFR de médecine ; ex- Institut Universitaire Hématologie-IUH)
18:30-20:30 (2h)
› Detection of copy number alteration signal from plasma DNA LINE-1 targeted bisulfite sequencing : towards a tumor burden marker
- Klaus VON GRAFENSTEIN, Institut de recherche en santé, environnement et travail
18:30-20:30 (2h)
› DupFinder: a powerful and accurate Nextflow pipeline to detect gene duplications from whole genome sequencing data
- Assane Mbodj, IRD
18:30-20:30 (2h)
› Identifying LTR-retrotransposon RNA-protein interactions using Comprehensive Identification of RNA-binding proteins (ChIRP-MS) in S. cerevisiae
- Hélène BONNET, Institut de Recherche Saint-Louis - Hématologie Immunologie Oncologie (Département de recherche de l'UFR de médecine ; ex- Institut Universitaire Hématologie-IUH)
18:30-20:30 (2h)
› Implementation of pangenome graphs to study rice transposon dynamics
- Svitlana Sushko, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Campus UAB, Edifici CRAG, Bellaterra, Barcelona 08193, Spain
18:30-20:30 (2h)
› Mode, tempo, and functional consequences of transposable element mobilization in selfing and outcrossing Arabidopsis lyrata populations
- Louna De Oliveira, Institut de biologie de l'ENS Paris
18:30-20:30 (2h)
› Nanopore targeted sequencing to study transposition and DNA methylation profiles of mobile elements in Arabidopsis thaliana.
- Matteo Barois, Institut de biologie de l'ENS Paris
18:30-20:30 (2h)
› Using pangenomes to elucidate the impact of TEs in the polyploidization and domestication of cotton
- Lucia Campos Dominguez, Centre for Research in Agricultural Genomics
18:30-20:30 (2h)
9:00 - 10:00 (1h)
Session 3
› Chemical screening to identify inhibitors of human LINE-1 endonuclease activity in cancer and aging
- Aurélien Doucet, Institut de Recherche sur le Cancer et le Vieillissement
09:40-10:00 (20min)
10:00 - 10:50 (50min)
Coffee break
10:50 - 12:10 (1h20)
Session 4
› Plant mobile domain proteins ensure Microrchidia 1 expression to fulfill transposon silencing
- Guillaume Moissiard, Laboratoire Génome et développement des plantes UMR5096
10:50-11:10 (20min)
› Role of transposable elements in a parasitoid wasp ongoing speciation
- Camille Heisserer, Institut de recherche sur la biologie de l'insecte UMR7261
11:10-11:30 (20min)
› Is the siRNA pathway involved in somatic regulation of transposable elements in the mosquito Aedes aegypti?
- Alexander Bergman, Interactions Virus-Insectes - Insect-Virus Interactions
11:30-11:50 (20min)
› REPET novelties : a versatile and modular package
- johann confais, Université Paris-Saclay, INRAE, URGI, 78026, Versailles, France, Université Paris-Saclay, INRAE, BioinfOmics, Plant bioinformatics facility, 78026, Versailles, France
11:50-12:10 (20min)
12:10 - 14:00 (1h50)
Lunch
14:00 - 15:20 (1h20)
Session 5
› Impact of viral infections on transposable element transcripts and small RNA abundances in Aedes aegypti
- Chloé Garambois, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
14:00-14:20 (20min)
› HELA: A fast and accurate tool for Helitron annotation
- Zhen Li, Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198 Gif-sur-Yvette, France
14:20-14:40 (20min)
› Transposable element mobility as a motor of genomic variation in Beech trees ?
- Abirami Soundiramourtty, Laboratoire Génome et développement des plantes
14:40-15:00 (20min)
› Study of the interactome and expression of the ORF1p protein encoded by LINE-1 retrotransposons in the brain under aging and pathophysiological conditions.
- Tom BONNIFET, CIRB - Collège de France
15:00-15:20 (20min)
15:20 - 16:00 (40min)
Coffee break
16:00 - 17:30 (1h30)
Round Table - Vincent Colot
19:00 - 22:30 (3h30)
Gala dinner on the beach
Restaurant Pescadoras
Route De La Plage Nord Camping Marisol,
66440 Torreilles Plage
France
9:00 - 10:20 (1h20)
Session 6
› Transposon insertions associate with transcriptional variability linked to rice domestication and breeding
- Raúl CASTANERA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Campus UAB, Edifici CRAG, Bellaterra, Barcelona 08193, Spain
09:00-09:40 (40min)
› Transposable elements as an evolutionary driving force in cactophilic Drosophila species
- Daniel Siqueira de Oliveira, Université Claude Bernard Lyon 1, Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University
10:00-10:20 (20min)
10:30 - 10:50 (20min)
Coffee break
10:50 - 11:50 (1h)
Session 7
› Decoding Human Endogenous Retrovirus Landscape in liver metastatic colorectal cancers: Implications for Diagnosis and Prognosis
- Julien Viot, ONCOLOGY BESANCON INSERM 1098, Autoimmunité, Transplantation, et Inflammation (UMR 1098)
11:10-11:30 (20min)
› Characterization of Transposable Elements in Pangenomes
- Somia SAIDI, Université Paris-Saclay, INRAE, URGI, 78026 Versailles, France., Université Paris-Saclay, INRAE, BioinfOmics, Plant bioinformatics facility, 78026, Versailles, France.
11:30-11:50 (20min)
